Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866222:139866282:[+] chr19:51302704:51302772:[-] nonBSJ supported Exon

circRNA 5':CCGU-GUCUUCCAGCAAGUCCAC-GUCUUCCAACAAAGCCAUGUCUUC-----CAGACUA--UCCA-UGUC 3'


           || | |::|| ||| |||:: :|| ||||:|| ||| :||| ||:


target  3':GGAGUCUGGGGGCCCA-CAGUUUCCAGGGCCCCCCG-UGGCACAGGAGUCACCGUCAGCCUCGGGUCACGA 5'

 -29.40 2 KARR-seq
chrX:139866225:139866282:[+] chr19:51302708:51302772:[-] nonBSJ supported Exon

circRNA 5':UGUCUUCCAGCAAGUCCAC-GUCUUCCAACAAAGCCAUGUCUUC-----CAGACUA--UCCA-UGUC 3'


            | |::|| ||| |||:: :|| ||||:|| ||| :||| ||:


target  3':UCUGGGGGCCCA-CAGUUUCCAGGGCCCCCCG-UGGCACAGGAGUCACCGUCAGCCUCGGGUCACGA 5'

 -28.50 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:51302704:51302772:[-] target - chr19:51302715-51302716 C>T RECA-EU ICGC
chr19:51302704:51302772:[-] target - chr19:51302718-51302719 G>A LAML-KR ICGC
chr19:51302704:51302772:[-] target - chr19:51302759-51302760 C>T LICA-CN ICGC
chr19:51302708:51302772:[-] target - chr19:51302715-51302716 C>T RECA-EU ICGC
chr19:51302708:51302772:[-] target - chr19:51302718-51302719 G>A LAML-KR ICGC
chr19:51302708:51302772:[-] target - chr19:51302759-51302760 C>T LICA-CN ICGC