5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865790:139865852:[+] | chr19:8531119:8531167:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUUCCAGUCAGUCAGUGUCUUCCAGA 3' ||| | |:|: ||||| ||| ||||||||:||: | |:| ||||| target 3': GGUAUGAU--UUAU-GAAGGAA---------GUCAAAGAAGGUCGGUU-GAAAUAUUAGGUC 5' |
-35.80 | 2 | KARR-seq |
| chrX:139865819:139865845:[+] | chr19:8530354:8530379:[+] | nonBSJ supported | CDS |
circRNA 5':AUCCAGGUCUUCCAGUCAGUCAGUGUC 3' ||||:|||||||||:| || |:||: target 3':AAGGUUCAGAAGGUCGGACA-UUACGU 5' |
-33.60 | 1 | KARR-seq |
| chrX:139865594:139865609:[+] | chr19:8530364:8530379:[+] | nonBSJ supported | CDS |
circRNA 5':AUCCACGUCUUCCAGG 3' |||| ||||||||| target 3':AAGGUUCAGAAGGUCG 5' |
-21.70 | 1 | KARR-seq |
| chrX:139865638:139865669:[+] | chr19:8531130:8531156:[+] | nonBSJ supported | CDS |
circRNA 5':UCUUCCAUCAAAUACAGAUCUUCCAGCUAAUC 3' ||||| ||| |||||||||:||: target 3':UGAAGGAAGUCAA-----AGAAGGUCGGUUGA 5' |
-25.90 | 1 | KARR-seq |
| chrX:139865790:139865851:[+] | chr19:8531120:8531167:[+] | nonBSJ supported | CDS |
circRNA 5':UCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUUCCAGUCAGUCAGUGUCUUCCAG 3' ||| | |:|: ||||| ||| ||||||||:||: | |:| |||| target 3': GGUAUGAU--UUAU-GAAGGAA---------GUCAAAGAAGGUCGGUU-GAAAUAUUAGGU 5' |
-32.90 | 2 | KARR-seq |
| chrX:139865599:139865649:[+] | chr19:8531131:8531191:[+] | nonBSJ supported | CDS |
circRNA 5':CGUCUUCCAGGAAAUCCAUGUCUUCCAAUAA---------UUUCAAGGUCUUCCA-UCAAA 3' |||| | ||| |||:::| ||| :|||| ||||||| :||| target 3':ACAGACGAGCCUGGUGGUGUGGUCGGUAUGAUUUAUGAAGGAAGUCAAAGAAGGUCGGUUG 5' |
-31.40 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr19:8530354:8530379:[+] | target | - | chr19:8530371-8530372 | G>T | LICA-CN | ICGC |
| chr19:8530364:8530379:[+] | target | - | chr19:8530371-8530372 | G>T | LICA-CN | ICGC |