Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865336:139865385:[+] chr19:1088666:1088721:[-] nonBSJ supported Intron

circRNA 5':CCAGGG----UU-UCC------GAUGGCA--C-CUGUGUCAAGGUCUUCCAACAACUCCGGGUC 3'


            ||||| || ||| ||||| | |||||| |||: || || |||:


target  3':CGUCCCCGCAAACAGGACGUCCCUACCCCCAGCGACACA----CAGGCGGA----GAUCCCCGA 5'

 -28.30 2 KARR-seq