Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866689:139866716:[+] chr18:52942888:52942914:[-] nonBSJ supported CDS

circRNA 5':UCUGUGUCUUCC-AGCAUCUUCAUGUCUU 3'


            ||||| || ||:|:


target  3':UGACACCUUAUACUCUUCUCA--ACGGGU 5'

 -6.50 1 KARR-seq
chrX:139866738:139866787:[+] chr18:53254239:53254280:[-] nonBSJ supported Intron

circRNA 5':AUCAACUGGCUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCU 3'


            ||| :||| || ||||| ||| || |:|:| |


target  3':AAGUG--UCGACAACAAU---CA-AAGGUGGCA-AGAAAGAAUGGCGUG 5'

 -17.20 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr18:52942888:52942914:[-] target 167728 chr18:52942891-52942892 G>A Pitt-Hopkins_syndrome|not_provided ClinVar
chr18:52942888:52942914:[-] target 565375 chr18:52942895-52942896 AAT>A Pitt-Hopkins_syndrome ClinVar
chr18:52942888:52942914:[-] target 569100 chr18:52942898-52942899 A>AT Pitt-Hopkins_syndrome ClinVar