Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865726:139865790:[+] chr18:29463422:29463479:[-] nonBSJ supported Intron

circRNA 5': AGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUU 3'


            ||:| ||| :|:| ||||: :|||| :| ||||| |||||| |||||:


target  3':GUCGAUCU--UCUGAA-GGGUGUAGAGAUGUAGUUUUAUUUA-AAGGU--UUCUUUU--UCCAGGU 5'

 -30.50 2 KARR-seq
chrX:139865724:139865790:[+] chr18:29463424:29463479:[-] nonBSJ supported Intron

circRNA 5': CUAGUU--CUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUU 3'


            |||| ||||| :| ||||: :|||| :| ||||| |||||| |||||:


target  3':CGAUCUUCUGAAGG---------GUGUAGAGAUGUAGUUUUAUUUA-AAGGU--UUCUUUU--UCCAGGU 5'

 -32.50 2 KARR-seq