Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866750:139866793:[+] chr18:20736041:20736086:[+] nonBSJ supported Intron

circRNA 5':AAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUG------AUCUU--CUGAC 3'


            |:| |||: |:|||| |:|:|| |: ||||| ||| |||||


target  3':GUGU-GGUG--GGAGGU--CGGGGG-CG-ACGACCGGGUGUAGUCCUGACUGU 5'

 -31.90 1 KARR-seq
chrX:139866741:139866793:[+] chr18:20736013:20736048:[+] nonBSJ supported Intron

circRNA 5':AACUGGCUCAAUAUCCAUGUCUUCCAACGUC--UCCAGUGUGCUGAUCUUCUGAC 3'


            ||||:| |||| ||: ||||| ||||| |:|| ||


target  3':CUGACUG-----UAGG-----------GCGAAAAGGUC---CGACUCGGAGUCUC 5'

 -27.80 2 KARR-seq
chrX:139866753:139866793:[+] chr18:20736041:20736088:[+] nonBSJ supported Intron

circRNA 5':AUC-CAUG-UCUUCCAACGUCUCCAGUGUGCUG------AUCUU--CUGAC 3'


            || ||: :|:|||| |:|:|| |: ||||| ||| |||||


target  3':AAGUGUGGUGGGAGGU--CGGGGG-CG-ACGACCGGGUGUAGUCCUGACUGU 5'

 -31.60 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866741:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866741:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866750:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866753:139866793:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC