Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865412:139865445:[+]	chr17:79040997:79041038:[+]	nonBSJ supported	Intron	circRNA 5':AUCUCAAGGU--CU---UCCAGAUAAUCCUGAGCU----UCCA 3' \|\|\| \|\|\|\| \|\| \|\| \|\| \|:\|\|: \|\|: \|\|\| target 3':AAGAAGUCCACCGACAGAGACCUCGUGGGGA-CGGCCUCAGGA 5'	-17.70	2	KARR-seq
chrX:139865413:139865445:[+]	chr17:79040997:79041038:[+]	nonBSJ supported	Intron	circRNA 5': UCUCAAGGU--CU---UCCAGAUAAUCCUGAGCU----UCCA 3' \|\|\| \|\|\|\| \|\| \|\| \|\| \|:\|\|: \|\|: \|\|\| target 3':AAGAAGUCCACCGACAGAGACCUCGUGGGGA-CGGCCUCAGGA 5'	-17.70	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr17:79040997:79041038:[+]	target	-	chr17:79041004-79041005	C>G	LAML-KR	ICGC