Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866495:139866516:[+] chr17:78313071:78313094:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGAAA-AUCCACGUC 3'


            || ||| |||||||||


target  3':UCAUCCGGUACCGCUAGGUGCAGG 5'

 -16.90 3 KARR-seq
chrX:139866507:139866553:[+] chr17:78313039:78313081:[+] nonBSJ supported CDS

circRNA 5':AAUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUC-CACGUCU 3'


            |||||||||:| ||| || |||:| |:|||| || |||


target  3':CUAGGUGCAGGAC-UUG--UC-GUAUA-AGGGUCGUCUCACGUCCAGC 5'

 -32.00 1 KARR-seq
chrX:139866495:139866553:[+] chr17:78313039:78313094:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAGAAA-AUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUC-CACGUCU 3'


            || ||| |||||||||:| ||| || |||:| |:|||| || |||


target  3':UCAUCCGGUACCGCUAGGUGCAGGAC-UUG--UC-GUAUA-AGGGUCGUCUCACGUCCAGC 5'

 -34.70 1 KARR-seq
chrX:139866500:139866553:[+] chr17:78313039:78313088:[+] nonBSJ supported CDS

circRNA 5':UCCAGAAA-AUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUC-CACGUCU 3'


            ||| |||||||||:| ||| || |||:| |:|||| || |||


target  3': GGUACCGCUAGGUGCAGGAC-UUG--UC-GUAUA-AGGGUCGUCUCACGUCCAGC 5'

 -33.90 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:78313039:78313081:[+] target - chr17:78313052-78313053 G>T LICA-CN ICGC
chr17:78313039:78313088:[+] target - chr17:78313052-78313053 G>T LICA-CN ICGC
chr17:78313039:78313094:[+] target - chr17:78313052-78313053 G>T LICA-CN ICGC