Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866729:139866751:[+] chr17:73786629:73786651:[+] nonBSJ supported Intron

circRNA 5':CAGUCUUCCAUCAACU-GGCUCAA 3'


            ||:||: ||| || ||||||


target  3':AUCGGAGA-UAGAGGACCCGAGUC 5'

 -20.00 2 KARR-seq
chrX:139865900:139865945:[+] chr17:73802920:73802967:[+] nonBSJ supported Intron

circRNA 5':CUUCCGGAAAAAA--UCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGA 3'


            |||| :|| ||| || ||| ||| ||||: |||


target  3':AAAGGAUUUGACUGAAGGGACA-AAGACCGGAAAGAGACAGGUCUACUG 5'

 -22.10 1 KARR-seq
chrX:139865912:139865945:[+] chr17:73802920:73802953:[+] nonBSJ supported Intron

circRNA 5':AUCCAGGUCUUCCAGCCAAUAUAUGUCUUCCUGA 3'


            ||| || ||| ||| ||||: |||


target  3':AAGGGACA-AAGACCGGAAAGAGACAGGUCUACUG 5'

 -18.60 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865900:139865945:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC