Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865925:139865962:[+] chr17:62496790:62496822:[-] nonBSJ supported CDS

circRNA 5':AGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUCCAG 3'


            ||| || ||| || || |||||||


target  3':ACGGACAAAACCAU---GACG-CUC-GUCAAGAAGGUU 5'

 -14.00 2 KARR-seq
chrX:139865899:139865923:[+] chr17:62499392:62499420:[-] nonBSJ supported CDS

circRNA 5': UCUUC-CGGAAAAAA---UCCAGGUCUUC 3'


            ||||| |:|| |||| : ||:


target  3':AAGAAGAGUCUAACCAAAAAGGUGU-GAGA 5'

 -14.20 2 KARR-seq
chrX:139866203:139866240:[+] chr17:62499075:62499110:[-] nonBSJ supported CDS

circRNA 5':UCCGG-GUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUC 3'


            ||: :||| |:||| ||| || || |||


target  3': GGUGUUAGAC--UUCUUACAACACCAAACGUGAGUCAA 5'

 -10.80 2 KARR-seq
chrX:139866228:139866272:[+] chr17:62499047:62499089:[-] nonBSJ supported CDS

circRNA 5': CUUCCAGCAAGUCCACGUCUUCCAACAAAGCCAU-GUCUUCCAGAC 3'


            | ||| || ||||| ||| |||: :||| |||


target  3':AGUAGGAAA---AGAUGCAGUACUGUGUGUAGGUGUUAGACU-UCUU 5'

 -19.10 2 KARR-seq
chrX:139866352:139866415:[+] chr17:62499392:62499442:[-] nonBSJ supported CDS

circRNA 5':GUCUUC-CAGCAAA-----UCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGC 3'


            ||||| ||| |||||: ||: |||| || |||| |||||||||


target  3':AAGAAGAGUCUAACCAAAAAGGUGU-GAGAUU--UUUC--------AGUUAGU-------CAGAAGGUC 5'

 -28.10 2 KARR-seq
chrX:139866252:139866286:[+] chr17:62499340:62499372:[-] nonBSJ supported CDS

circRNA 5':ACAAAG-CCAUGUCUUCCAGACUAUCCAUGUCUUCC 3'


            ||||| ||||:|| || ||||| || ||||


target  3':AGUUUCGGGUAUAGUUCGUAAGAUAG--AC-GAAGU 5'

 -25.20 1 KARR-seq
chrX:139865792:139865867:[+] chr17:62496331:62496384:[-] nonBSJ supported CDS

circRNA 5':CAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCC-AGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUC 3'


            ||| ||:| |||| ||| ||||: || ||:| |||||:|| :|||


target  3': UCA-UUGGAGACAGUAUUAAA------AGGGACAGAGAUUUC-------CAUAA--------UUUAGGUGGGGAAA 5'

 -23.70 1 KARR-seq
chrX:139865560:139865581:[+] chr17:62500796:62500818:[-] nonBSJ supported 5UTR

circRNA 5': CUG-GUCUUCCA--CCAAAUCCAGA 3'


            ||| |: || |||||| |||


target  3':CGACACGC--GGAUCGGUUUA-GUCC 5'

 -13.10 1 KARR-seq
chrX:139866062:139866085:[+] chr17:62499060:62499084:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCUGAAAAUCUAC-GUCUU 3'


            ||| |||:|| :|||


target  3':GCAGUACUGUGUGUAGGUGUUAGAC 5'

 -12.30 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:62499047:62499089:[-] target - chr17:62499061-62499062 G>T LICA-CN ICGC
chr17:62499060:62499084:[-] target - chr17:62499061-62499062 G>T LICA-CN ICGC
chrX:139865899:139865923:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC