Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866291:139866337:[+] chr17:55183792:55183843:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUCAA----AUCCAUAGCU-UCCGAAAA---AUCCAGGUCU 3'


            |||| |:|:| ||||| ||||| |||| ||| |||||:|:|


target  3':AUAGGUUCGGGA-GGAGUAAAGAUAGGU-UCGAGAGGAGUAAAGAUAGGUUCGG 5'

 -41.90 1 KARR-seq
chrX:139866291:139866332:[+] chr17:55183795:55183843:[+] nonBSJ supported CDS

circRNA 5':AAUCCUUGUCUUCCCUCAA----AUCCAUAGCU-UCCGAAAA---AUCCA 3'


            |||| |:|:| ||||| ||||| |||| ||| |||||


target  3':AUAGGUUCGGGA-GGAGUAAAGAUAGGU-UCGAGAGGAGUAAAGAUAGGUU 5'

 -33.70 1 KARR-seq
chrX:139866743:139866783:[+] chr17:55198386:55198430:[+] nonBSJ supported Intron

circRNA 5':CUGGCUCAAU--AUCCAUGUCUUCCAACG--UCUCCAGUGUG-CUG 3'


            ||||| ||| || |||| ||||||||||: ||


target  3':CACCGACCUUCUUAGA-ACUCAAGGGAAACAAGAGGUCACAUAGAA 5'

 -31.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:55198386:55198430:[+] target rs6967 chr17:55198420-55198421 C>T Rapidly progressive Alzheimer's disease|Rapidly progressive Alzheimer's disease GWAS Catalog
chr17:55198386:55198430:[+] target - chr17:55198420-55198421 C>T LICA-CN ICGC
chrX:139866291:139866332:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866291:139866337:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC