Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865803:139865872:[+] chr17:41132652:41132728:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAGAAAUCCAG-GU----CUUC-CAGUCAGUCAGUG-----UCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


            |:| :||| :|||| |: |:|| || |||:| |||||| ||| |||||| | ||


target  3':GCGG-GGGUGACCCC--GGGUCGCGUGGCGGAGCGUGCCACCGUCGCCGAGGAGAAGGAGGAGG-AGAAGCAGAAAGCGGA 5'

 -42.20 2 KARR-seq
chrX:139865800:139865872:[+] chr17:41132652:41132722:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUG-----UCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


           || || :|||| || |:||: || |||:| |||||| ||| |||||| | ||


target  3':GUGACCCCGGGUCGCGU----GG--CGGAGCGUGCCACCGUCGCCGAGGAGAAGGAGGAGG-AGAAGCAGAAAGCGGA 5'

 -38.70 1 KARR-seq
chrX:139865802:139865872:[+] chr17:41132652:41132705:[+] nonBSJ supported CDS

circRNA 5':GUGUCUUCCAGAA----AGAAA-UCCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCA 3'


            ||:||: || || ||| |||||| ||:||| ||| |||||| | ||


target  3':GGCGGAGCGUGCCACCGUCGCCGAGG---AGAAGG------------AGGAGG-------AGAAGCAGAAAGCGGA 5'

 -32.60 3 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:41132652:41132705:[+] target - chr17:41132665-41132666 A>C PACA-CA ICGC
chr17:41132652:41132722:[+] target - chr17:41132665-41132666 A>C PACA-CA ICGC
chr17:41132652:41132728:[+] target - chr17:41132665-41132666 A>C PACA-CA ICGC