Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865831:139865846:[+] chr17:35609838:35609854:[-] nonBSJ supported CDS

circRNA 5': CAGUCAGUCAGUGUCU 3'


            |||:|||:||||:||


target  3':GGUCGGUCGGUCAUAGU 5'

 -26.00 2 KARR-seq
chrX:139865801:139865846:[+] chr17:35609813:35609854:[-] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGGUCU-UCCAGUCAGUCAGUGUCU 3'


            ||: ||| | ||| :|||| |||||:|||:||||:||


target  3':ACAU-GAAAAAGA--CGAUAG--UCAGACAGGUCGGUCGGUCAUAGU 5'

 -37.60 2 KARR-seq