Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865918:139865974:[+] chr17:4575602:4575633:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUC 3'


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target  3': AGAAGG------------AGAAGG------AGGAGGAGAAG------UAGUGACGA 5'

 -23.30 4 KARR-seq
chrX:139865861:139865890:[+] chr17:4575399:4575419:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCACCAAAUCCAGGUCUUCCAGUC 3'


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target  3':CCAGAAGGUGG---------AGAAGGUCAA 5'

 -30.30 4 KARR-seq
chrX:139866094:139866145:[+] chr17:4576361:4576417:[-] nonBSJ supported CDS

circRNA 5':GCCAUGUCUUCCAGAA----AAUCCACAUCUUCCAAU-GGCCUC-CAGGUCUUCCAGA 3'


            ||||| ||| ||:|| :|| | |||||| ||||


target  3':GGGUACCCGACGUCCCCUCCUUGGGCCCCCACCCAGUCUCGUCGUGUCCAGU-GGUCA 5'

 -27.50 1 KARR-seq
chrX:139865550:139865581:[+] chr17:4575388:4575418:[-] nonBSJ supported CDS

circRNA 5': CCAGCAAUUACUGGUCUUCCACCAAAUCCAGA 3'


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target  3':CGGU--UUGAGGUCCAGAAGGUGGAGAAGGUCA 5'

 -32.20 1 KARR-seq