Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866620:139866653:[+] chr17:4111424:4111462:[-] nonBSJ supported Intron

circRNA 5':AGGUCUU-CCAGCAUCUCCAGGGCUUC-CA---GCAUCU 3'


            |:||: ||| ||| ::||:|| || |||||


target  3':CUUAGGUUGGUGGUAAAUCGUUCGGAGAGUUUACGUAGU 5'

 -26.60 2 KARR-seq
chrX:139866589:139866609:[+] chr17:4111426:4111451:[-] nonBSJ supported Intron

circRNA 5':UUCCAACAAAUCCAU-------GUCUUC 3'


            |||||| |||| |:||:


target  3':UAGGUUGGU--GGUAAAUCGUUCGGAGA 5'

 -14.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866589:139866609:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC