Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865748:139865773:[+] chr16:30723161:30723188:[+] nonBSJ supported CDS

circRNA 5':UCUUCCA-GUCAAUCAGU---GUCUUCCAG 3'


            ||||| :|| ||| | |||:||||


target  3': GAAGGAGUAGG-AGUGAGGCCAGGAGGUG 5'

 -21.60 3 KARR-seq
chrX:139865766:139865808:[+] chr16:30723154:30723188:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGAAAGAAA-UCCAGGUCUUCCAGUCAAUCAGUGUCUU 3'


            ||||| ||| ||||:|||| ||| ||||


target  3': GAAGGAGUAGGAGUGAGG-CCAGGAGGU------GUCUCAGA 5'

 -29.60 3 KARR-seq