Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865896:139865907:[+] chr15:86123688:86123698:[+] nonBSJ supported CDS

circRNA 5':ACAUCUUCCGGA 3'


            ||||:| ||


target  3':AGUAGGAA-CCA 5'

 -6.70 1 KARR-seq
chrX:139866197:139866238:[+] chr15:86071713:86071760:[+] nonBSJ supported Intron

circRNA 5':AAAAAAUCC--GGGUCUUCCAGGAAAUCCGUGUCUUCCA--------GCAAG 3'


            |||||: |:|: || :|| ||:||| || ||||


target  3':AUUUUUGUAAUCUCGACACGUGUUU----CAUAGACCGUAUUUUACCCGUUG 5'

 -12.30 1 KARR-seq
chrX:139866205:139866238:[+] chr15:86071713:86071750:[+] nonBSJ supported Intron

circRNA 5':CGGGUCUUCCAGGAAAUCCGUGUCUUCCA--------GCAAG 3'


            |:|: || :|| ||:||| || ||||


target  3':UCUCGACACGUGUUU----CAUAGACCGUAUUUUACCCGUUG 5'

 -12.10 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865896:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC