Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865344:139865363:[+] chr15:76593821:76593842:[-] nonBSJ supported Intron

circRNA 5':UCCGAUGG--CACCUGU-GUCAA 3'


            ||||||| |||||| ||||


target  3':CGGCUACCUAGUGGACUUCAGU 5'

 -25.50 2 KARR-seq
chrX:139865344:139865363:[+] chr15:76593821:76593843:[-] nonBSJ supported Intron

circRNA 5':UCCGAUGG--CACCUGU-GUCAA 3'


            ||||||| |||||| ||||


target  3':CGGCUACCUAGUGGACUUCAGUC 5'

 -25.70 1 KARR-seq
chrX:139865344:139865366:[+] chr15:76593821:76593845:[-] nonBSJ supported Intron

circRNA 5':UCCGAUGG--CACCUGU-GUCAAGGU 3'


            ||||||| |||||| ||| |||


target  3':CGGCUACCUAGUGGACUUCAG-UCCU 5'

 -27.50 1 KARR-seq