Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865842:139865854:[+] chr15:76214076:76214087:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAA 3'


            | ||| |||||


target  3':UC-GAAUGUCUUA 5'

 -6.30 1 KARR-seq
chrX:139865412:139865449:[+] chr15:76222759:76222807:[+] nonBSJ supported Intron

circRNA 5':AUCUCAAGGUCUUCCAGAUAAUCCU------------------GAGCUUCCAGAAA 3'


            |||| ||||||||| ||| :||||: ||||


target  3':AAGAG-----GAAGGUCUAA-AGGUGUCGUGACCCGUAUAAUCUUCGAGACUCUU 5'

 -23.60 1 KARR-seq
chrX:139865899:139865909:[+] chr15:76214077:76214086:[+] nonBSJ supported Intron

circRNA 5':UCUUCCGGAAA 3'


            ||| |:|||


target  3':CGAAUGUCUU 5'

 -5.30 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865899:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC