Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865627:139865644:[+] chr15:69096869:69096887:[-] nonBSJ supported Intron

circRNA 5':UAAUUUCAAG-GUCUUCCA 3'


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target  3':CUUUUAGAUCACAGAAGGG 5'

 -13.70 4 KARR-seq
chrX:139866300:139866338:[+] chr15:69083514:69083548:[-] nonBSJ supported Exon

circRNA 5':CUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUU 3'


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target  3':CAAGGGAGAGUCGGAUGUG-GGGAAAC--AGGU-CAGGG 5'

 -25.20 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866300:139866338:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC