Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866154:139866179:[+] chr15:68521321:68521354:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAAA--------AUCCUUGUCU-UCCC 3'


            ||||||| || |||| :|||


target  3': AGAAGGUAAUGUAAGCGUGUAAGAACCCACGGGG 5'

 -13.10 1 KARR-seq
chrX:139866154:139866211:[+] chr15:68521321:68521398:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAAA--------AUCCUUGUCU-UCCC---UUAAAUCUAUAGCUUCCAAAA---------AAUCCGGGUCU 3'


            ||||||| || |||| :||| |:|| |:|||:||| ||| |::|||:


target  3': AGAAGGUAAUGUAAGCGUGUAAGAACCCACGGGGUCCAGUUCGUCUGUCGGAGGACUAUUUACUGUCUUA-GUUCAGGA 5'

 -29.50 2 KARR-seq
chrX:139866280:139866305:[+] chr15:68521321:68521354:[-] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAAA--------AUCCUUGUCU-UCCC 3'


            ||||||| || |||| :|||


target  3': AGAAGGUAAUGUAAGCGUGUAAGAACCCACGGGG 5'

 -13.10 1 KARR-seq