Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865893:139865942:[+] chr15:44695181:44695227:[+] nonBSJ supported CDS

circRNA 5':UCCA-CAUCUUCCGGAAAAAAU-CCAGGUCUUCCAGCCAAUAUAUGUCUUCC 3'


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target  3':UGGUAGAAGAAGGAGUAACAUUCGGUCGAG----UCGGACGA--ACAGACGGA 5'

 -30.20 1 KARR-seq
chrX:139865887:139865942:[+] chr15:44695181:44695246:[+] nonBSJ supported CDS

circRNA 5':AGUCAA----UCCA-CAUCUUCCGGAAAAAAUCC-------AGGUCUUC-CAGCCAAUAUAUGUCUUCC 3'


            ||| |||| |||| ||: ||| |:|:| | ||||| ||||| ||


target  3':GCAGAAGGAGAGGUGGUAGU-GGUAGAAGA-AGGAGUAACAUUCGGUCGAGUCGGACGA--ACAGACGGA 5'

 -32.80 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865887:139865942:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865893:139865942:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC