Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866661:139866715:[+] chr14:91412670:91412735:[-] nonBSJ supported Intron

circRNA 5': UUCCAACA----UCUC-CACGUC-UUC---CAGCAUCUCUGUG--UCUU-CCAGCAUCUUCAUGUCU 3'


            |||| |||| ||||| ||| ||| ||:||: ||:| || :||| ||


target  3':AAAGGGACGAACAAGAGUGUGCAAAAAGUAAGUCAGAGGGAUUCUAAGGAUGGGAACUU-GGUAGAG 5'

 -32.30 1 KARR-seq
chrX:139866650:139866715:[+] chr14:91412673:91412735:[-] nonBSJ supported Intron

circRNA 5':AUCUGCUCGUCUUCCAACAUCUC-CACGUC-UUC---CAGCAUCUCUGUG--UCUU-CCAGCAUCUUCAUGUCU 3'


            |||||| || |||| ||||| ||| ||| ||:||: ||:| || :||| ||


target  3':GGGACGAACA---------AGAGUGUGCAAAAAGUAAGUCAGAGGGAUUCUAAGGAUGGGAACUU-GGUAGAG 5'

 -36.90 1 KARR-seq