Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866711:139866749:[+]	chr14:70234862:70234905:[+]	nonBSJ supported	CDS	circRNA 5':UGUCUUCCAACAACUACCCAGUCUUCCA-UCAA-----CUGGCUC 3' \|\|\|\|:\|\| \|\|\|\|\| \| \| \|\|\| \|\|\| \|:\|\|\|\| target 3':UCAGAGGGCUACUUAUGGG-CUGUCGGUGAGUACUACAGGCCGAU 5'	-29.20	1	KARR-seq
chrX:139865751:139865798:[+]	chr14:70234874:70234917:[+]	nonBSJ supported	CDS	circRNA 5':UCCAGUCAAUCAGUGUCUUCCAGAAAGAA-AUCCAGGUCUUCCAGUCAA 3' \|\| \|: \|\|\|\|:\|\| \|\| \|\|\| \|:\|\| \|: \| \|\|\| \|\|\| target 3':CGG-CGACCUAAAUCAGAGGG-CUA-CUUAUGGG-CU-GUCGGUGAGUA 5'	-24.50	1	KARR-seq
chrX:139866710:139866749:[+]	chr14:70234914:70234963:[+]	nonBSJ supported	CDS	circRNA 5':AUGUCU-UCCAACAACUA-CCC------AGUC-UUCCAUCAA-------CUGGCUC 3' \|:\|\|: \|\|\|\| \|\| \|\|\| \|:\|\| \|\|\|\|\|: \|\|\|\|\|: target 3': AUAGGCAGGU-----AUAGGGAACUUCUUAGAAAGGUGCAGGAAGAGGGACCGGC 5'	-24.00	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr14:70234914:70234963:[+]	target	-	chr14:70234938-70234939	G>A	BTCA-JP	ICGC