Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865823:139865884:[+] chr14:55428468:55428530:[-] nonBSJ supported Intron

circRNA 5':AGGUCUUCCA----------GUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUCUU 3'


            | || :||| |:||| |||||:||| ||:|| | |||| || |||||:|:


target  3':ACGAG-GGGUGGUUUUUUCCCGGUC-GUCACGGAAUGAAG--UUGGAAG-AGAAUAGGG----GGUCCGGGU 5'

 -43.30 1 KARR-seq
chrX:139865823:139865844:[+] chr14:55428468:55428498:[-] nonBSJ supported Intron

circRNA 5':AGGUCUUCCA----------GUCAGUCAGUGU 3'


            | || :||| |:||| |||||:


target  3':ACGAG-GGGUGGUUUUUUCCCGGUC-GUCACGG 5'

 -19.70 1 KARR-seq