Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866703:139866736:[+] chr14:45695965:45696004:[-] nonBSJ supported CDS

circRNA 5':CAUCU--UCA--UG-UCUUCCAACAACUACCCAG-UCUUC 3'


            |||: ||| || |||| || ||| ||||


target  3':AUAGGAAAGUAAACAAGAAAGUGGUUAAAAAUCAAAGAAA 5'

 -8.60 1 KARR-seq
chrX:139866688:139866736:[+] chr14:45695951:45696004:[-] nonBSJ supported CDS

circRNA 5':CUCUGUGUCUUCCAGC-AUCU--UCA--UG-UCUUCCAACAACUACCCAG-UCUUC 3'


            |||| ||| |||: ||| || |||| || ||| ||||


target  3':AAGACU--GAAAAAUAAUAGGAAAGUAAACAAGAAAGUGGUUAAAAAUCAAAGAAA 5'

 -11.50 2 KARR-seq