Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865573:139865643:[+] chr14:31674803:31674875:[-] nonBSJ supported Intron

circRNA 5':AAAUCCAGAUCU-UCCAGGAAAAUCCACGUCUUCCA-------------GGAAAUCCAUGUCUUC-CAAUAAUUUCAAGGUCUUCC 3'


            |||| ||| ||| :|| || |::|| ||| ||||| ||| | || ||: |||||


target  3':AUUAG---UAGUCAGGAUCUCAAAGAAGUGGAUGGUUAAAAAUAAAGAACCUUUUC--ACAUUUGUGU--------UUUGAGAAGU 5'

 -18.70 1 KARR-seq
chrX:139865574:139865643:[+] chr14:31674803:31674875:[-] nonBSJ supported Intron

circRNA 5': AAUCCAGAUCU-UCCAGGAAAAUCCACGUCUUCCA-------------GGAAAUCCAUGUCUUC-CAAUAAUUUCAAGGUCUUCC 3'


            |||| ||| ||| :|| || |::|| ||| ||||| ||| | || ||: |||||


target  3':AUUAG---UAGUCAGGAUCUCAAAGAAGUGGAUGGUUAAAAAUAAAGAACCUUUUC--ACAUUUGUGU--------UUUGAGAAGU 5'

 -18.40 1 KARR-seq