Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865518:139865544:[+] chr13:48973115:48973136:[+] nonBSJ supported Intron

circRNA 5':AGUAAAUCAAGUCUUCCAGCAAAUCCA 3'


            ||| |||||||| |||||


target  3':ACAU----UUCAGAAGAAAA-UUAGGA 5'

 -14.80 2 KARR-seq
chrX:139865503:139865535:[+] chr13:48973108:48973146:[+] nonBSJ supported Intron

circRNA 5':AGCUCC--------AAGUCUUCCAGUAAAUCAAGUCUUCCA 3'


            |||| |||||||| |||| ||||||


target  3':ACGAGUAAAAACAUUUCAGAAGAAAA-UUAGGA-AGAAGGA 5'

 -22.60 2 KARR-seq