Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865379:139865434:[+] chr13:23945274:23945305:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGUCUUC-CAGAUAAUC 3'


            |:|:|||:| ||||| |:||: |||||||:


target  3':AGUCUAGAGG----------------------UUAGAA--CUAGGUCAGUCUAUUG 5'

 -23.60 1 KARR-seq
chrX:139865358:139865396:[+] chr13:23945272:23945305:[-] nonBSJ supported CDS

circRNA 5':UGUCAAGGUCUUCCAACAACUCCGGGUCUUC-CAGC-GACU 3'


            ||| ||:|| ||||| || |:||: ||| :||


target  3':UCAG-UCUAG-AGGUU----AGAACUAGGUCAGUCUAUUG 5'

 -22.30 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:23945272:23945305:[-] target 1724874 chr13:23945283-23945284 CA>T Charlevoix-Saguenay_spastic_ataxia ClinVar
chr13:23945272:23945305:[-] target 652757 chr13:23945289-23945290 T>A Spastic_paraplegia ClinVar
chr13:23945274:23945305:[-] target 1724874 chr13:23945283-23945284 CA>T Charlevoix-Saguenay_spastic_ataxia ClinVar
chr13:23945274:23945305:[-] target 652757 chr13:23945289-23945290 T>A Spastic_paraplegia ClinVar