Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865784:139865831:[+]	chr12:66219124:66219157:[+]	nonBSJ supported	CDS	circRNA 5':AGGU-CUUCCAGUCAAUCA-GUGUCUUCCAGAAAGAAAUCCAGGUCUUCC 3' \| \| \|\|\|\|\| \|:\|\|\|:\|\| \|\|\|\|\| target 3':ACGACGAAGGACCCCGCCGGCGCAGGAG----------------AGAAGA 5'	-19.80	1	KARR-seq
chrX:139865864:139865882:[+]	chr12:66237133:66237152:[+]	nonBSJ supported	Intron	circRNA 5':CUUCCACCAAAUC-CAGGUC 3' \|\|\|\| \|\|\| \|\|:\|: target 3':AAAGGACACAUAGUGUUCGA 5'	-10.30	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr12:66219124:66219157:[+]	target	-	chr12:66219149-66219150	G>C	LINC-JP	ICGC