5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865440:139865485:[+] | chr12:49178839:49178890:[-] | nonBSJ supported | Intron |
circRNA 5': CUUCCAGAAAAUCCACAUCUUCCAGACAA-UCCAUGUC--------UUCCG--GACA 3' |:||||| |||||| |||:| :|| |:|| |:|| ||| target 3':AGGAGGUCCA----GUGUAG--GGUUUACAGGGGAAUAGUCACUCCGAGGGAGACUGG 5' |
-29.20 | 1 | KARR-seq |
| chrX:139865440:139865485:[+] | chr12:49181556:49181619:[-] | nonBSJ supported | Intron |
circRNA 5': CUUCCAGAAAAUCCACAUCU----------------------UCCAGACAAUCCAUGUCUUCCGGACA 3' ||:||| | ||||| |: :|||| || ||:||:||:||| target 3':CGAGGGUGUC---GGUGUCGGUACAGGGUAAGUCGGACCGUCCGGGUCCG--AGUCACGGAGGGUCUGG 5' |
-37.10 | 3 | KARR-seq |
| chrX:139865440:139865488:[+] | chr12:49178839:49178894:[-] | nonBSJ supported | Intron |
circRNA 5': CUUCCAGAAAAUCCACAUCUUCCAGACAA-UCCAUGUC--------UUCCG--GACAAUC 3' |:||||| |||||| |||:| :|| |:|| |:|| ||| |:| target 3':AGGAGGUCCA----GUGUAG--GGUUUACAGGGGAAUAGUCACUCCGAGGGAGACUGGUGGG 5' |
-29.50 | 2 | KARR-seq |