Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866326:139866392:[+] chr11:129992241:129992304:[+] nonBSJ supported CDS

circRNA 5':AAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUU 3'


            |||| ||||:|||| ||| : :|||| | |||| |:|| ||| || |||:: ||


target  3':AUUAGAGCCAGGAGGUGGUGAAGGAGGGGAAGAAGGAGUAGGAGUAGUAGGA-GUA--GGUGUCGAC 5'

 -47.80 1 KARR-seq
chrX:139865999:139866030:[+] chr11:129991674:129991697:[+] nonBSJ supported CDS

circRNA 5':UAACCUCCCAGUCUUCCAGAAAAUCCACGUCU 3'


            ||| || |||||||| || |:||


target  3': UUGUAGUAUCAGAAGG------AGAAGUAG 5'

 -15.80 1 KARR-seq
chrX:139866341:139866412:[+] chr11:129992251:129992307:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUC-CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAA-UUAAUGUCUUCC 3'


            || |||| || |||:|||| |||| ||:||| || |||||| ||| |:| ::||:||


target  3':AUCAUUAGAGC-CAGGAGGU------GGUGAAGGAGG-------GGA--AGAAGG-AGUAGGAGUAGUAGGAGU 5'

 -47.00 1 KARR-seq
chrX:139865999:139866016:[+] chr11:129991681:129991697:[+] nonBSJ supported CDS

circRNA 5':UAACCUCCCAGUCUUCCA 3'


            ||| || ||||||||


target  3': UUGUAGUAUCAGAAGGA 5'

 -14.70 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:129991674:129991697:[+] target - chr11:129991676-129991677 T>G BTCA-JP ICGC