Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865894:139865930:[+] chr11:129762828:129762861:[-] nonBSJ supported 5UTR

circRNA 5':CCACAUCUUCC-GGAAAAAAUCCAGGUCUUCCAGCCAA 3'


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target  3':UGUG-AGGAGGUCCUUUUGUAAGUU--GGAGGUCGGU 5'

 -36.40 1 KARR-seq
chrX:139865942:139865979:[+] chr11:129762819:129762853:[-] nonBSJ supported 5UTR

circRNA 5':CUGAAGAUC-CACGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||| | ||| ||:||||| ||| ||| || ||


target  3':AACUACGAUUGUG-AGGAGGUCCUUUU-GUA-AGUUGG 5'

 -22.10 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:129762819:129762853:[-] target - chr11:129762844-129762845 A>G LINC-JP ICGC
chr11:129762828:129762861:[-] target - chr11:129762844-129762845 A>G LINC-JP ICGC
chrX:139865894:139865930:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC