5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865794:139865817:[+] | chr11:65267710:65267735:[+] | nonBSJ supported | Exon |
circRNA 5':GUCAAUC--AGUGUCUUCCAGAAAGA 3' |||| ||: || ||| target 3':AAGUUUGAUUCGAUGAUAUAAAUUCC 5' |
-5.50 | 1 | KARR-seq |
| chrX:139866530:139866550:[+] | chr11:65267128:65267147:[+] | nonBSJ supported | Exon |
circRNA 5':AUGUCUUCCAGAAAAUCCACG 3' |||||||||| ||||| target 3':GACAGAAGGUCAAA-AGGUGA 5' |
-23.80 | 3 | KARR-seq |
| chrX:139866556:139866580:[+] | chr11:65268283:65268307:[+] | nonBSJ supported | Exon |
circRNA 5':CAGAAAAUAUAUGUCUUCCAACUAA 3' |||||||| ||: ||:| target 3':AUCUUUUAUUUAUUUUCCAAUGGUA 5' |
-8.30 | 5 | KARR-seq |
| chrX:139866081:139866104:[+] | chr11:65267668:65267691:[+] | nonBSJ supported | Exon |
circRNA 5':GUCUUCCAAAAAAGCCA--UGUCUUC 3' ||||||| |||||| ||:||| target 3':GAGAAGGU--UUUCGGAAGACGGAAU 5' |
-22.30 | 2 | KARR-seq |
| chrX:139866508:139866541:[+] | chr11:65267136:65267167:[+] | nonBSJ supported | Exon |
circRNA 5':AUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGA 3' || ||:||||| |||||||||| target 3':AAGAAGCGGAAGGGCAUGAAG--ACAGAAGGUCA 5' |
-29.90 | 2 | KARR-seq |
| chrX:139866325:139866377:[+] | chr11:65267900:65267940:[+] | nonBSJ supported | Exon |
circRNA 5':AAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCA 3' |||: | ||| ||| || ||||| ||||| || ||||||| target 3':GUUUGUGACCA--AGGACC-UUAGG-ACAGACGA-CGA-------CAGAAGGA 5' |
-30.20 | 1 | KARR-seq |
| chrX:139865794:139865830:[+] | chr11:65267706:65267735:[+] | nonBSJ supported | Exon |
circRNA 5':GUCAAUC--AGUGUCUUCCAGAAAGAAAUCCAGGUCUUC 3' |||| ||: || |||:||| target 3':AAGUUUGAUUCGAUGAUAUAAAU--------UCCGGAA 5' |
-9.30 | 3 | KARR-seq |
| chrX:139866624:139866661:[+] | chr11:65267238:65267277:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCC-AGCA--UCUCCAGGGCUUCCAGCA-UCUGCUCGUCU 3' |||| ||| ||| |||| || :||:|| || target 3':AAAGGAUCGAACAGAAAAAA-GAAGA-CGAAGGAUGAAAAGU 5' |
-19.70 | 1 | KARR-seq |
| chrX:139866165:139866198:[+] | chr11:65267071:65267099:[+] | nonBSJ supported | Exon |
circRNA 5':AAUCCUUGUCUUCCCUUA-AAUCUAUAGCUUCCAA 3' ||||| :|||| ||||| ||||| target 3':GUAGGAUGGUGAGGGUUAAUUAGA-----AAGGU 5' |
-19.60 | 1 | KARR-seq |
| chrX:139865954:139866035:[+] | chr11:65267085:65267146:[+] | nonBSJ supported | Exon |
circRNA 5': GUCUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGAAA-----AUCC-ACGUCUUCCCA 3' ||||||||| |||| |||| |||: |:||||| ||||:| |||| || :|||| target 3':ACAGAAGGUCAAA-AGGU---GAAG----UUUGAAGAUAGAAG-----------------AGGUUUAACAAAGUAGGAUGGU-GAGGG 5' |
-42.00 | 1 | KARR-seq |
| chrX:139866371:139866432:[+] | chr11:65267070:65267123:[+] | nonBSJ supported | Exon |
circRNA 5':UCUUCCAACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCCUACUUGU-----GUC-UUCCAA 3' |||| |:||||| :|||||| || ||| :|| |||: : :|| ||||| target 3':UGAAG-----------AUAGAAGA-GGUUUAACAA-AGUAGGAUGG-UGAGGGUUAAUUAGAAAGGUA 5' |
-29.40 | 2 | KARR-seq |
| chrX:139866624:139866657:[+] | chr11:65267242:65267277:[+] | nonBSJ supported | Exon |
circRNA 5':CUUCC-AGCA--UCUCCAGGGCUUCCAGCA-UCUGCUC 3' |||| ||| ||| |||| || :||:|| target 3':AAAGGAUCGAACAGAAAAAA-GAAGA-CGAAGGAUGAA 5' |
-18.10 | 1 | KARR-seq |
| chrX:139866069:139866117:[+] | chr11:65267515:65267563:[+] | nonBSJ supported | Exon |
circRNA 5':CUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUCUUCCAGAAAAU---CCACA 3' |:|| |:|: |:||||| |||| |::|||| |||| target 3':CAUUUGUGGGAGUAGAAGAG---UUCGAAAUGGAAGAUUGAAGACGUGGUGG 5' |
-23.50 | 2 | KARR-seq |
| chrX:139866262:139866323:[+] | chr11:65268028:65268098:[+] | nonBSJ supported | Exon |
circRNA 5':GUCUUCCAGACUAUCCAUG-UCUU-------CCAGAAAAUCCUUG-----UCUUCCCUCAAAUCCAUAGCUUCCG 3' |||||| |||| ||:| ||| ||||| ||: :||||| || ||| |||||||| target 3':AGGAAGGACCU-UAGGAAAAAGGAUCGAAGUGGUGGUUUAGCAAUCGCGAGGAAGGAAGA--AGG-AUCGAAGGA 5' |
-41.90 | 1 | KARR-seq |
| chrX:139865984:139866037:[+] | chr11:65267106:65267167:[+] | nonBSJ supported | Exon |
circRNA 5':AUCCAUGUCUUCCAGUAACCUCCCAGUCUUCCAGAAAAUCCAC-----------GUCUUC-CCAAC 3' || :|:||||| || || || ||||||||| ||||| :||||| |||| target 3':AAGAAGCGGAAGGGCA-UGAAGA--CAGAAGGUCAAA-AGGUGAAGUUUGAAGAUAGAAGAGGUUU 5' |
-44.20 | 1 | KARR-seq |
| chrX:139865757:139865813:[+] | chr11:65268033:65268089:[+] | nonBSJ supported | Exon |
circRNA 5':CAAUCAGUGUCUUCC-AGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUG--UCUUCC-AGA 3' |||| |||| || |||::|| ||: || |||||| || target 3':CUUAGGAAA--AAGGAUCGAAGUGGUGGUUUAGCAA-UCGCG-AGGAAGGAAGAAGGAUCG 5' |
-23.20 | 1 | KARR-seq |
| chrX:139865747:139865807:[+] | chr11:65266969:65267021:[+] | nonBSJ supported | Exon |
circRNA 5':AUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAA--UCAGU---GUCU 3' |||:|| |:||| || || ||||||| |:||| || || :||| target 3':AAGAGGGA--------CGCAGUAC------CUAAAGUUCCAGAAAAUUAGUGGAAGCCAAAUUAGAG 5' |
-24.70 | 1 | KARR-seq |
| chrX:139866393:139866434:[+] | chr11:65267981:65268027:[+] | nonBSJ supported | Exon |
circRNA 5':CCAUCAAAUUA-AUGUCUUCCA--GC-CUACUUGUGUCUUC-CAACA 3' ||:|||||: |: :||| :| || |: |:||||| | || target 3':AGUGGUUUAGCGUGACCGAGGACCUGAGAAAAGGAUAGAAGUGGUGC 5' |
-24.10 | 1 | KARR-seq |
| chrX:139866620:139866679:[+] | chr11:65267878:65267933:[+] | nonBSJ supported | Exon |
circRNA 5':AGGUCUUCCAGCAUCUCCAGGGCUUCCAG-CAUCUGCUCGUCUUCCAACA-UC------UCCACGUCU 3' ||| ||| || ||| | | ||||| ||||||| || ||||| ||| target 3':ACCA-----------AGGA-CCUUAGGACAGACGACGA-CAGAAGGAUCUAAGUGACUUAGGUGAAGAC 5' |
-35.50 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr11:65267706:65267735:[+] | target | - | chr11:65267720-65267721 | A>G | PRAD-CA | ICGC |
| chr11:65267710:65267735:[+] | target | - | chr11:65267720-65267721 | A>G | PRAD-CA | ICGC |
| chrX:139866262:139866323:[+] | circRNA | - | chrX:139866318-139866319 | C>T | BTCA-JP | ICGC |