Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866293:139866323:[+]	chr11:64536993:64537021:[-]	nonBSJ supported	CDS	circRNA 5':UCCUUGUCUUCCCUCAAAUCCAUAGCUUCCG 3' \|\|: :\|\|\|\|\|\|\| \|\|:\|\| :\|\| target 3':CGGGUUGGAAGGGAAGAAA-GUGUCU-GGGA 5'	-21.00	3	KARR-seq
chrX:139865770:139865839:[+]	chr11:64540876:64540947:[-]	nonBSJ supported	CDS	circRNA 5':CCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAA-------GAAAUCCAGGUCUUCCA-GU-CAGUC 3' \|\|\| \|\| \|\|\|\| \|\|\|:\| \|\|\|\|:\| \|\|\| \|\| :\|\|\|\|\|\|\|\|:\| \|: \|\|\|\| target 3':AGUCGACCAAUUUUGACA-AAGG---GUUGG--ACAGGA-GUCCCAAUCCCCCCUACGGGUCCAGAGGACACGCGUCAA 5'	-36.70	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:64540876:64540947:[-]	target	1321942	chr11:64540916-64540917	AG>A	Neurodevelopmental_disorder	ClinVar
chrX:139866293:139866323:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC