Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865974:139865996:[+] chr11:62609173:62609204:[-] nonBSJ supported 5UTR

circRNA 5':CUUCCAGAAAAUCCA----------UGUCUUCC 3'


            |||||: ||||||| ||||:||


target  3':AAAGGUU-UUUAGGUAAAUUAUAUAACAGGAGC 5'

 -20.90 1 KARR-seq
chrX:139866499:139866552:[+] chr11:62609175:62609217:[-] nonBSJ supported 5UTR

circRNA 5':UUCCAGAAAAUCCACGUCUUCCAACCAAGCCAUGUCUUCCAGAAAAUCCACGUC 3'


            ||||: ||||||| ||||:|| || ||||


target  3': AGGUU-UUUAGGUAAAUUAUAUA--------ACAGGAGC-CUAUCUCCUGCAU 5'

 -18.80 1 KARR-seq
chrX:139866796:139866823:[+] chr11:62609125:62609158:[-] nonBSJ supported 5UTR

circRNA 5':UCAGGUCUUCCAGUGUCU--------GCAAUAUCCA 3'


            |||||| ||| |||| |||


target  3': GUCCAGCUACGCACCUCACCUGCCUCGUUCGAGG 5'

 -17.50 1 KARR-seq
chrX:139865432:139865484:[+] chr11:62609155:62609207:[-] nonBSJ supported 5UTR

circRNA 5':AUCCUGAGCUUCCAGAAAAUCCACAUCUUCCAGACAAUCCA----------UGUCUUCCGGAC 3'


            ||||: ||||| ||| |||||:| |||||| ||||:| ||||


target  3':GAGGAU---AAGGUAG---AGGAUA--AAGGUUU-UUAGGUAAAUUAUAUAACAGGA-GCCUA 5'

 -35.50 4 KARR-seq
chrX:139866683:139866715:[+] chr11:62609097:62609131:[-] nonBSJ supported 5UTR

circRNA 5':AGCAUC---UCUGUGUCUUCCAGCAUCUUCAUGUCU 3'


            |||:| :||| | ||| :|| |||


target  3':ACGUGGCAAGGAC-CUUCAUGACGUUAUGGUCCAGC 5'

 -16.70 1 KARR-seq
chrX:139866580:139866612:[+] chr11:62609097:62609159:[-] nonBSJ supported 5UTR

circRNA 5':AGCUACGUCUUCCAA---------CAAAUCCAUGUC------------------------UUCCUA 3'


            || ||| ||| ||| ||| ||| :||||


target  3':ACGUGGCA--AGGACCUUCAUGACGUUAUGGUCCAGCUACGCACCUCACCUGCCUCGUUCGAGGA 5'

 -13.40 1 KARR-seq
chrX:139866094:139866137:[+] chr11:62609162:62609206:[-] nonBSJ supported 5UTR

circRNA 5':GCCAUGUCU----UCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGU 3'


            |||| ||: ||||: ||||||| || |||| ||


target  3':AGGUAGAGGAUAAAGGUU-UUUAGGUAAAUUAUAUAACAGGAG--CCU 5'

 -26.80 2 KARR-seq
chrX:139865956:139865996:[+] chr11:62609173:62609204:[-] nonBSJ supported 5UTR

circRNA 5':CUUCCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUGUCUUCC 3'


            |||||: |||||||| ||||:||


target  3':AAAGGUU-UUUAGGUAAAUUAUAUA--------ACAGGAGC 5'

 -21.00 1 KARR-seq
chrX:139865967:139865996:[+] chr11:62609169:62609204:[-] nonBSJ supported 5UTR

circRNA 5':UCCAUGUCUUCCAGAAAAUCCA----------UGUCUUCC 3'


            || |:| |||||: ||||||| ||||:||


target  3': GG-AUA-AAGGUU-UUUAGGUAAAUUAUAUAACAGGAGC 5'

 -21.60 1 KARR-seq
chrX:139866612:139866641:[+] chr11:62609098:62609129:[-] nonBSJ supported 5UTR

circRNA 5':AUAUC--UCCAGGUCUUCCAGCAUCUCCAGGG 3'


            ||:| ||| || ||| |||||


target  3':CGUGGCAAGGACCUUCAUGACGUUAUGGUCCA 5'

 -18.80 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866580:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC