Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865762:139865833:[+]	chr11:47591234:47591293:[+]	nonBSJ supported	CDS	circRNA 5':AGUGUCUU-CCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAG 3' \|\|\|: \|\| \|\|\| \| :\|\| \| \|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|: \|\|\| target 3':ACACGACUCGGC----------GUCGACGAGCUGAGGA--UCAGAGAAGGUGAGGACCUUGGUCCAGGUGGU 5'	-42.40	1	KARR-seq
chrX:139865824:139865889:[+]	chr11:47591233:47591293:[+]	nonBSJ supported	CDS	circRNA 5':GGU-CUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACG-UCUUCCAC-CAAAU--CCAGGUCUUCCAGU 3' \|\| \|\| \|\|:\| \| \|\|\|: \|\|: \|\| :\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|: \|\|\|\| target 3':ACACGAC--UCGG-C-GUCGACGAG---CUGA--GGAUCAGAGAAGGUGAGGACCUUGGUCCAGGUGGUC 5'	-43.70	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:47591233:47591293:[+]	target	-	chr11:47591293-47591294	A>T	LINC-JP	ICGC
chr11:47591234:47591293:[+]	target	-	chr11:47591293-47591294	A>T	LINC-JP	ICGC