Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866120:139866143:[+]	chr11:46842776:46842801:[-]	nonBSJ supported	5UTR	circRNA 5': UUCCAAUG-GCCUCCAGGUCUUCCA 3' \|:\|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\|\| target 3':GAGGGUAACACGAAGGUCCAAAAGGA 5'	-27.90	1	KARR-seq
chrX:139866122:139866179:[+]	chr11:46842745:46842791:[-]	nonBSJ supported	CDS	circRNA 5':CCAA-UGGCCUCCAGGUCUUCCAGACUAUCCAU----GUCUUCCAGAAAAUCCUUGU-CUUCCC 3' \|\|\| \|\|\|\| :\|\| \|\|\| :\|\|:\|: \|\|: :\|\|\|:\|\|\| \|\|\|\| \|\|\|\|\| target 3':AGUUGACCG-----UCA-AAG--UUGGUGAGUGACAGUAGAGGGU--------AACACGAAGG 5'	-30.80	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr11:46842745:46842791:[-]	target	-	chr11:46842770-46842771	T>A	COCA-CN	ICGC