Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865959:139866005:[+] chr11:43719598:43719642:[+] nonBSJ supported Intron

circRNA 5': CCAGAAAAUCCAUGUCU-----UCCAGAAAAUCCAUGUCUUCCAGUAACCUC 3'


            |||| ||| ||||| ||| |||||| |:| ||| : |||:


target  3':GGGUC----AGGGACAGAGUCAAAGGAA--UUAGGUUCGGU-GGUGG-UGGGU 5'

 -33.10 1 KARR-seq
chrX:139865954:139866005:[+] chr11:43719598:43719645:[+] nonBSJ supported Intron

circRNA 5':GUCUUCCAGAAAAUCCAUGUCU-----UCCAGAAAAUCCAUGUCUUCCAGUAACCUC 3'


            |||:|||| ||| ||||| ||| |||||| |:| ||| : |||:


target  3': AGAGGGUC----AGGGACAGAGUCAAAGGAA--UUAGGUUCGGU-GGUGG-UGGGU 5'

 -38.80 1 KARR-seq