Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866662:139866694:[+] chr11:18609522:18609561:[-] nonBSJ supported Intron

circRNA 5': UCCAACA--------UCUCCAC-GUCUUCCAGCAUCUCUGUG 3'


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target  3':AAGGUUGUAAUUCUAGAGAGGUCCCGGAAGUUCG---AGACAG 5'

 -32.30 1 KARR-seq
chrX:139866661:139866694:[+] chr11:18609521:18609561:[-] nonBSJ supported Intron

circRNA 5': UUCCAACA--------UCUCCAC-GUCUUCCAGCAUCUCUGUG 3'


            |||||||| |||||| |:|||| ||| |||||


target  3':GAAGGUUGUAAUUCUAGAGAGGUCCCGGAAGUUCG---AGACAG 5'

 -33.20 1 KARR-seq