Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865809:139865865:[+] chr10:120803590:120803641:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAGAAAUCCAGGUCU-----UCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCU 3'


            ||||| ||||||: ||||| |||:|||| ||| |||| ||


target  3':AGUCUUAGACGAAGUCCAGGAAAAGAGGUC-------CACGGAAGA-CUUAG-AGAUAGAG 5'

 -36.20 1 KARR-seq
chrX:139865809:139865869:[+] chr10:120803590:120803644:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAGAAAUCCAGGUCU-----UCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCUUCCA 3'


            ||||| ||||||: ||||| |||:|||| || |||| :|||:||


target  3':AGUCUUAGACGAAGUCCAGGAAAAGAGGUC-------CACGGAAGA-CU---UAGAGAUAGAGGGG 5'

 -42.60 1 KARR-seq
chrX:139866286:139866322:[+] chr10:120802244:120802279:[-] nonBSJ supported CDS

circRNA 5':CAGAAAA-UCCUUGUCUU-CCCUCAAAUCCAUAGCUUCC 3'


            ||| ||||::|||: |||| ||||: ||:|


target  3':CUCUGGACAGGAGUAGAGCGGGAAG--AGGUGCAGAGG 5'

 -30.20 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866286:139866322:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC