Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865479:139865526:[+] chr10:103124656:103124695:[-] nonBSJ supported Exon

circRNA 5':CCGGA-CAA--UCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCA 3'


            |||| ||| ||| |:| |||| |||| |: ||||: |||||


target  3':UGCCUCGUUCGAGG-AUA--AGGUA----GAGGGACG--AGGUU-UUUAG 5'

 -27.10 2 KARR-seq
chrX:139865780:139865807:[+] chr10:103124615:103124642:[-] nonBSJ supported Exon

circRNA 5':AUCC---AGGU-CUUCCAGUCAAUCAGUGUCU 3'


            ||| |||| || ||:| |:||| |||


target  3':AAGGACCUCCAUGAC-GUUA--UGGUC-CAGC 5'

 -16.40 1 KARR-seq
chrX:139865996:139866043:[+] chr10:103124659:103124713:[-] nonBSJ supported Exon

circRNA 5':CAGUAACCUCCCA----GUCUUCCAGAAAAUCCAC--GUCUUCCCAACAA----UCCA 3'


            ||:|| |||| :|||:|| |||| :||| |||


target  3':CUCGUUCGAGGAUAAGGUAGAGGGACG---AGGUUUUUAGAUAAAUUAUAUAACAGGA 5'

 -23.40 2 KARR-seq
chrX:139866192:139866236:[+] chr10:103124614:103124686:[-] nonBSJ supported Exon

circRNA 5':CUUCCAAAA--------AAU-CCGGGUCUUC-CA-GGAAA-------------UCCGU----GUCUUCCAGCA 3'


            |||| ||| ||:|||| || ||| ||| :|||:|| ||


target  3':CAAGGACCUCCAUGACGUUAUGGUCCAGCUACGUACCUCACCUGCCUCGUUCGAGGAUAAGGUAGAGGGACGA 5'

 -26.50 4 KARR-seq
chrX:139865897:139865921:[+] chr10:103124609:103124642:[-] nonBSJ supported Exon

circRNA 5': CAUC-UUCC-GGAAAA-----AAU-CCAGGUCU 3'


            ||:| |||| ||| ||| |||||||


target  3':CGUGGCAAGGACCUCCAUGACGUUAUGGUCCAGC 5'

 -21.90 2 KARR-seq
chrX:139865924:139865958:[+] chr10:103124663:103124697:[-] nonBSJ supported Exon

circRNA 5':CAGCCAAUAUA-UGUCUUCCUGAAGAUCCAC--GUCUU 3'


            ||| ||| ::|||:|||| |||| :|||


target  3':UUCGAGGAUAAGGUAGAGGGACG---AGGUUUUUAGAU 5'

 -21.00 2 KARR-seq
chrX:139866330:139866392:[+] chr10:103124661:103124713:[-] nonBSJ supported Exon

circRNA 5':CCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCAC--GUCUUCCAACAAAGCCAUGUCUU 3'


            ||:|: ||| ||| :|||:|| || |||| :||| ||||:


target  3':CGUUCG--AGGAUA---AGG--UAGAGGGACG---AGGUUUUUAGAUAAAUUAUAUA--ACAGGA 5'

 -27.60 2 KARR-seq
chrX:139865938:139865996:[+] chr10:103124665:103124715:[-] nonBSJ supported Exon

circRNA 5':CUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAU--GUCUUCCAGAAAAUCCAUGUCUUCC 3'


            |||||: |||| |||:|| |||| :||| ||||:||


target  3':CGAGGAUA---AGGU--AGAGGGACG---AGGUUUUUAGAUAAAUUAUAUA--ACAGGAGU 5'

 -28.10 1 KARR-seq
chrX:139866802:139866826:[+] chr10:103124614:103124641:[-] nonBSJ supported Exon

circRNA 5':CUUCC---AGUGU-CUGCAAUAUCCAGGU 3'


            |||| || || |||||||| ||||||


target  3':CAAGGACCUC-CAUGACGUUAU-GGUCCAG 5'

 -25.70 2 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865897:139865921:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC