Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866652:139866680:[+]	chr10:95789495:95789545:[+]	nonBSJ supported	Intron	circRNA 5':CUGCUCG------------------UCUUCCAA---CAUCUCCACGU-CUU 3' \|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\| \|\|\| \|:: target 3':AACGAGAAACUGUUUAUCUACAGAAAGAAGGGGAACGAAGAGG-GCAUGGGA 5'	-21.50	1	KARR-seq
chrX:139866579:139866610:[+]	chr10:95789455:95789476:[+]	nonBSJ supported	Intron	circRNA 5':AAGCUACGUCUUCCAACAAAUCCAUGUCUUCC 3' \|:\|\|\|\| :\|\|\| \|\|\|\|\| \|\|\|\| target 3':GUUGAUGGGGAA------UUAGG----GAAGA 5'	-16.20	2	KARR-seq
chrX:139866648:139866680:[+]	chr10:95789464:95789511:[+]	nonBSJ supported	Intron	circRNA 5': GCAUCUGCUCGU-CU-------UCCAA-----CAUCUCC-ACGUCUU 3' \|\| \|\|\| \|:\|\|\| \|: :\|\|\|\| \|\|\|\| \| \|\| :\|\|\| target 3':ACGAAGA-GGGCAUGGGAGAAAAGGGUUUCUCAGUAGUUGAUGGGGAAU 5'	-20.90	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866579:139866610:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC
chrX:139866579:139866610:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC