Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865876:139865909:[+] chr1:245023693:245023728:[-] nonBSJ supported CDS

circRNA 5': CCAGGUCUUC-CAGUCAA-UCCACAUCUUCCGGAAA 3'


            |||:: ||: |||| ||||


target  3':GGGUUUCUUUUCGUUUUGAGAGGUAACAUUC-CCUUC 5'

 -10.40 2 KARR-seq
chrX:139865876:139865909:[+] chr1:245023670:245023728:[-] nonBSJ supported CDS

circRNA 5': CC--AGG-------UCUUCCAGUCAA----------------UCCACAUCUUCCGGAAA 3'


            || ||| ||:|||||:| |||| ||||


target  3':UGGUAUCCUACGAGAAGGAGGUCGGGUUUCUUUUCGUUUUGAGAGGUAACAUUC-CCUUC 5'

 -21.30 1 KARR-seq
chrX:139866494:139866533:[+] chr1:245023639:245023676:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAGAAAAUCCAC---GUCUUCCAACCAAGCCAUGU 3'


            |:|||: ||||: ||| |:||| || :||||:


target  3':AGUAGAG----UUUUGUGUGAAACGGAAAACUGUG-UGGUAUC 5'

 -18.90 1 KARR-seq
chrX:139865881:139865909:[+] chr1:245023684:245023728:[-] nonBSJ supported CDS

circRNA 5': UCUUCCAGUCAA----------------UCCACAUCUUCCGGAAA 3'


            ||:|||||:| |||| ||||


target  3':AAGGAGGUCGGGUUUCUUUUCGUUUUGAGAGGUAACAUUC-CCUUC 5'

 -20.70 1 KARR-seq
chrX:139866509:139866535:[+] chr1:245023635:245023662:[-] nonBSJ supported CDS

circRNA 5':UCCA-CGUCUUCCAACCAAGCCAUGUCU 3'


            || |:|||: ||| :| ||:||


target  3':UGGAAGUAGAGUUUUGUG-UGAAACGGAA 5'

 -12.70 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:245023635:245023662:[-] target 2033509 chr1:245023654-245023655 CTT>C Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023635:245023662:[-] target 2816872 chr1:245023641-245023642 A>G Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023639:245023676:[-] target 2033509 chr1:245023654-245023655 CTT>C Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023639:245023676:[-] target 2816872 chr1:245023641-245023642 A>G Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023670:245023728:[-] target 3645276 chr1:245023709-245023710 A>ACT Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023670:245023728:[-] target 522110 chr1:245023684-245023685 T>C Inborn_genetic_diseases ClinVar
chr1:245023684:245023728:[-] target 3645276 chr1:245023709-245023710 A>ACT Developmental_and_epileptic_encephalopathy,_54 ClinVar
chr1:245023684:245023728:[-] target 522110 chr1:245023684-245023685 T>C Inborn_genetic_diseases ClinVar
chr1:245023693:245023728:[-] target 3645276 chr1:245023709-245023710 A>ACT Developmental_and_epileptic_encephalopathy,_54 ClinVar
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865881:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC