Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865585:139865613:[+] chr1:235301106:235301127:[-] nonBSJ supported Intron

circRNA 5': UCCAGGAAAAUCCACGUCUUCCAGGAAAU 3'


            ||||| ||| :|||||||||||


target  3':AAGGUC-----AGG---GGAAGGUCCUUUU 5'

 -25.80 1 KARR-seq
chrX:139865923:139865979:[+] chr1:235483788:235483830:[-] nonBSJ supported Intron

circRNA 5':CCAGCCAAUAUA-UG-UCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||||| || |||:|||: ||||| ||| ||| ||||


target  3':UGUCGGAAGACUGACUAGAGGGAUGA--AGGUG-AGA-------------ACACAAGGG 5'

 -32.10 2 KARR-seq
chrX:139865912:139865979:[+] chr1:235483772:235483830:[-] nonBSJ supported Intron

circRNA 5':AUCCAGGUCUUC-----CAGCCAAUAUA-UG-UCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            |||||| || ||||| || |||:|||: ||||| ||| ||| ||||


target  3':GGGGUCCUGAUCGAACUGUCGGAAGACUGACUAGAGGGAUGA--AGGUG-AGA-------------ACACAAGGG 5'

 -40.70 2 KARR-seq