Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866279:139866324:[+] chr1:227100583:227100638:[+] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAU-----CCU-------UGUCUUCCCUCAAAUCCAUAGCUUCCGA 3'


            |:||:||| | ||: ||| :||||| || |||| :|: ||:


target  3':UCGGAGGGUGUCUUGUUCCUGGACCAAAUAGCAGAAACGAAG--AGGUCAUGGUGGUC 5'

 -28.60 2 KARR-seq
chrX:139865692:139865754:[+] chr1:227155132:227155198:[+] nonBSJ supported Intron

circRNA 5':GUCUU-CCACCAAAUCCA---AGUCUUCC--AGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCA 3'


            ||| |||| :|| ||:|| | ||: |: ||||:|| |: |||: |||


target  3':AAGACUGGUGAAAAGGGAUUGUCGGACGUAAUCGAGAUGGCGAAGAGGGGUGGGGUGUUUCUG--AGGC 5'

 -29.40 1 KARR-seq
chrX:139865692:139865735:[+] chr1:227155158:227155198:[+] nonBSJ supported Intron

circRNA 5':GUCUU-CCACCAAAUCCAAGUCUUCCAGUAAAUC-UAGUUCUUCCA 3'


            ||| |||| ||| || |||: |||:||| ||


target  3':AAGACUGGUGAAA-AGG----GAUUGUCGGACGUAAUCGAGAUGGC 5'

 -23.40 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866279:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC