5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866682:139866729:[+] | chr1:171460796:171460849:[+] | nonBSJ supported | Intron |
circRNA 5':CAGCAUCU----------CUGUGUCUUCCAGCAUCUUCAUGU-CUU-CCAACAACUACCC 3' ||| |||| ||| | ||| ||| ||| || ||||:||| target 3':GUC-UAGAAAUUUCAUGUGAC-CUAUUUACUCUU-AAG-ACAUGAACGG--GUUGGUGGA 5' |
-19.90 | 2 | KARR-seq |
| chrX:139865341:139865370:[+] | chr1:171526437:171526477:[+] | nonBSJ supported | CDS |
circRNA 5': GUUUCCGAUGGCA-CCUGU-GUCA----------AGGUCUUC 3' |:|| ||| ||||| |:| |::|||| target 3':ACGAACG--ACCUAGGGACAUCGGACAAAAAACCGUUUAGAAC 5' |
-15.60 | 2 | KARR-seq |
| chrX:139866203:139866229:[+] | chr1:171501497:171501523:[+] | nonBSJ supported | CDS |
circRNA 5':UCCGGGUCUUCCAGGAAAUCCGUGUCU 3' || ||||||||||| | |||| target 3':CGGACCAGAAGGUCCAUGACGGACAGC 5' |
-30.30 | 2 | KARR-seq |
| chrX:139865821:139865862:[+] | chr1:171501607:171501632:[+] | nonBSJ supported | CDS |
circRNA 5':CCAGGUCUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUACG 3' || |:| || || :|| ||||| target 3': GUGCGGCAAAUGC-UC-GU-GCA------------AGAUGA 5' |
-7.80 | 2 | KARR-seq |
| chrX:139865349:139865372:[+] | chr1:171526462:171526490:[+] | nonBSJ supported | CDS |
circRNA 5':UGGCAC----CUGUGUCAA--GGUCUUCCA 3' ||| |||||: || |:|| target 3':UCCGACUUCUGACACGAACGACCU-AGGGA 5' |
-14.60 | 2 | KARR-seq |