Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866104:139866161:[+] chr1:154188587:154188662:[-] nonBSJ supported Intron

circRNA 5':CCAGAAAAU--CCACAUCUUCCAAUGGCCU--CCA----------GGUCUUCCAGA-CUAUCC--------AUGUCUUCCA 3'


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target  3':UGUCCGCACUCGGUGGCGCGGG---CCGGGAUGGUGAUUGAAAGUUCAGAACACACGGGUAGGGAGUAACUUACG--AGGC 5'

 -33.50 1 KARR-seq
chrX:139866126:139866150:[+] chr1:154188595:154188620:[-] nonBSJ supported Intron

circRNA 5':UGGCCUCCAGGUCUU-CCAGACUAUC 3'


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target  3':CUCGGUGGCGCGGGCCGGGAUGGUGA 5'

 -21.20 1 KARR-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:154188587:154188662:[-] target - chr1:154188597-154188598 G>T PACA-CA ICGC
chr1:154188595:154188620:[-] target - chr1:154188597-154188598 G>T PACA-CA ICGC