Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866585:139866651:[+]	chr1:113992844:113992917:[+]	nonBSJ supported	Intron	circRNA 5':CGUCU--UCCAACAAAUCCAUGUCUUC-CUAUAUCUCCAGGUCUUCCAGCAUCUCC---------AGGGCUUCCAGCAU 3' \|:\| \|\|\|\| \|\|\|\|:\| \|:\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|:\| \|\|: target 3':ACGGUCUAGGUGG---AGGUGCUGGAGAGACACU-AGGUCGUCUGA--CGUAGAGAACAAAUCUUUCCCGGAAAAAGUGA 5'	-46.10	1	KARR-seq
chrX:139866585:139866644:[+]	chr1:113992851:113992917:[+]	nonBSJ supported	Intron	circRNA 5':CGUCU--UCCAACAAAUCCAUGUCUUC-CUAUAUCUCCAGGUCUUCCAGCAUCUCC---------AGGGCUU 3' \|:\| \|\|\|\| \|\|\|\|:\| \|:\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|:\| target 3':ACGGUCUAGGUGG---AGGUGCUGGAGAGACACU-AGGUCGUCUGA--CGUAGAGAACAAAUCUUUCCCGGAA 5'	-44.80	1	KARR-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866585:139866644:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC
chrX:139866585:139866651:[+]	circRNA	-	chrX:139866592-139866593	C>A	LICA-CN	ICGC