5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865878:139865938:[+] | chr1:64998136:64998178:[+] | nonBSJ supported | Intron |
circRNA 5':AGGU---CUUCCAGUCAAUCCACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGC-CAAUAUAUGUC 3' ||: ||:||||:| |:| ||||||:||: || ||| |||:| target 3':CCCGAACGAGGGUCGGAUGG------------------AGGUCCGGAGA--CGAGUU---UACGGU 5' |
-37.60 | 1 | KARR-seq |
| chrX:139865912:139865939:[+] | chr1:64983197:64983222:[+] | nonBSJ supported | Intron |
circRNA 5':AUCCAGGUCUUCCAGC-CAAUAUAUGUCU 3' ||| | ||| || |||| |:|| target 3':GGGGAACUCAAGAACGAGUUA---AUAGU 5' |
-10.70 | 1 | KARR-seq |
| chrX:139865894:139865938:[+] | chr1:64998136:64998195:[+] | nonBSJ supported | Intron |
circRNA 5':CCACAUCUU------------------CCGGAAAAAAUCCAGGUCUUCCAGC-CAAUAUAUGUC 3' |||||||: ||:| ||||||:||: || ||| |||:| target 3':UGUGUAGAGGAACCCUACCCGAACGAGGGUCGGAUGGAGGUCCGGAGA--CGAGUU---UACGGU 5' |
-35.90 | 1 | KARR-seq |
| chrX:139865573:139865598:[+] | chr1:64938094:64938128:[+] | nonBSJ supported | Intron |
circRNA 5': AAAUCCAGAU-CUUC-CAGGAAA------AUCCA 3' ||||||| ||:| ||| |:|| target 3':UUUUAGGUAGGUGAGGAGUCAGGAGUACAGUGGGA 5' |
-16.10 | 1 | KARR-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139865878:139865938:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |
| chrX:139865894:139865938:[+] | circRNA | - | chrX:139865903-139865904 | C>T | LINC-JP | ICGC |